Transmission Noise

[TurboProject]

Recently whenever my I'm coming to a stop and I disengauge the clutch and the transmission is in gear there is a grinding/rubbing noise. It's not so much a noise of grinding gears but kind of like metal on metal rubbing/grinding. If I throw the transmission in neutral and keep the clutch disengauged it will stop making the noise after a couple of seconds. But if it is in gear it makes that noise intermittently as I roll/brake to a stop. If I engauge the clutch again while I'm still moving the noise goes away. Could it be a bearing? Maybe the front bearing since it does it when in gear, rolling, with clutch disengauged since the rear wheels are still spinning the front shaft?
Also, this maybe be an unrelated problem, or just inherent behavior of the T-5 but if I'm rolling with the clutch disengauged and I very slowly try to change gears, as I'm putting it into a gear very slowly there is a point where I can feel gears hitting each other. It's done this ever since I bought it with 120,000 miles on it. It this something wrong or is it just the way the transmission works?

[TurboProject]

Oh, by the way, I thought the noise may have been due to low/old fluid so I changed my fluid with some Mobile 1 synthetic ATF but it still does it. The shifting feels a little smother though. And I don't think it's the clutch because I changed it last summer with a centerforce dual friction with the centerforce throw out bearing.

[TurboProject]

More info: it seems it doesn't matter if it's in gear or neutral, but it does only happen when the clutch is pushed in. Even at a stand still after coming to a stop, if I rev the engine with the clutch pushed in it will make the noise. Could it be the throw out bearing even though it's been replaced recently?

[uno]

i hope someone knows the answer to this...my car does the exact same thing...except not in neutral...when it starts doin it, i pull it out of gear..realease the clutch pedal, then push it back in and it usually goes away.....i'm clueless, i'm changing my clutch and TOB next week because my clutch is slipping...hopefully that will fix it ?????